Package: daedalus 0.1.0
Pratik Gupte
daedalus: Model health, social, and economic costs of a pandemic using DAEDALUS
Model the health, education, and economic costs of directly transmitted respiratory virus pandemics, under different scenarios of prior vaccine investment and reactive interventions, using the _DAEDALUS_ integrated health-economics model adapted from Haw et al. (2022) <doi.org/10.1038/s43588-022-00233-0>.
Authors:
daedalus_0.1.0.tar.gz
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daedalus.pdf |daedalus.html✨
daedalus/json (API)
NEWS
| # Install 'daedalus' in R: |
| install.packages('daedalus', repos = c('https://jameel-institute.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jameel-institute/daedalus/issues
- closure_data - Pandemic response strategy data for DAEDALUS
- country_codes_iso2c - Country names and ISO codes for DAEDALUS
- country_codes_iso3c - Country names and ISO codes for DAEDALUS
- country_data - Country demographic data for DAEDALUS
- country_gni - Values of statistical lives lost
- country_names - Country names and ISO codes for DAEDALUS
- economic_contacts - Economic sector contacts data for DAEDALUS
- epidemic_names - Infection characteristics for model epidemics
- infection_data - Infection characteristics for model epidemics
- infection_parameter_names - Infection characteristics for model epidemics
- life_value - Values of statistical lives lost
- vaccination_parameter_names - Vaccine investment scenario parameters
- vaccination_scenario_data - Vaccine investment scenario parameters
- vaccination_scenario_names - Vaccine investment scenario parameters
decision-supportepidemiological-modelshealth-economicspandemic-preparednesspublic-healthsdg-3
Last updated 7 days agofrom:23fd7e6a0b. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 11 2024 |
| R-4.5-win | OK | Nov 11 2024 |
| R-4.5-linux | OK | Nov 11 2024 |
| R-4.4-win | OK | Nov 11 2024 |
| R-4.4-mac | OK | Nov 11 2024 |
| R-4.3-win | OK | Nov 11 2024 |
| R-4.3-mac | OK | Nov 11 2024 |
Exports:daedalusdaedalus_countrydaedalus_infectiondaedalus_vaccinationget_costsget_dataget_epidemic_summaryget_incidenceget_new_vaccinationsis_daedalus_countryis_daedalus_infectionis_daedalus_vaccinationset_data
Comparing response strategies under uncertainty and valuations
Rendered fromstrategy_comparison.Rmdusingknitr::rmarkdownon Nov 11 2024.Last update: 2024-11-05
Started: 2024-11-05
Evaluating the costs of pandemic scenarios
Rendered frompandemic_costs.Rmdusingknitr::rmarkdownon Nov 11 2024.Last update: 2024-09-20
Started: 2024-09-20
Exploring uncertainty in pandemic costs due to parameter uncertainty
Rendered fromparameter_uncertainty.Rmdusingknitr::rmarkdownon Nov 11 2024.Last update: 2024-10-31
Started: 2024-10-31
Getting started with DAEDALUS
Rendered fromdaedalus.Rmdusingknitr::rmarkdownon Nov 11 2024.Last update: 2024-10-07
Started: 2024-07-09
Modelling threshold-dependent economic closures
Rendered fromthresholded_response.Rmdusingknitr::rmarkdownon Nov 11 2024.Last update: 2024-10-07
Started: 2024-09-10
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Represent countries and territories for DAEDALUS | class_country daedalus_country is_daedalus_country print.daedalus_country |
| Create and work with <daedalus_output> objects | as_daedalus_output class_daedalus_output is_daedalus_output print.daedalus_output validate_daedalus_output |
| Represent infection parameters for DAEDALUS | class_infection daedalus_infection is_daedalus_infection print.daedalus_infection |
| Represent vaccine investment scenarios for DAEDALUS | class_vaccination daedalus_vaccination is_daedalus_vaccination print.daedalus_vaccination |
| Pandemic response strategy data for DAEDALUS | closure_data |
| Country demographic data for DAEDALUS | country_data |
| Country names and ISO codes for DAEDALUS | country_codes_iso2c country_codes_iso3c country_names country_names_codes |
| DAEDALUS model for health, social and economic costs of a pandemic | daedalus |
| Economic constants used in DAEDALUS | earnings_loss_discount econ_constants edu_annual_ror edu_effectiveness_remote work_expected_years |
| Economic sector contacts data for DAEDALUS | economic_contacts |
| Epidemiological compartments and indices | COMPARTMENTS epi_constants i_D i_DATA_COMPARTMENTS i_dD i_dE i_dH i_E i_EPI_COMPARTMENTS i_H i_Ia i_Is i_R i_S N_DATA_COMPARTMENTS N_EPI_COMPARTMENTS N_INFECTION_SUBSYSTEM N_MODEL_COMPARTMENTS |
| Calculate daily incidences and summarise epidemic measures | epi_output_helpers get_epidemic_summary get_incidence get_new_vaccinations |
| Infection characteristics for model epidemics | epidemic_data epidemic_names infection_data infection_parameter_names |
| Get epidemic costs from a DAEDALUS model run | get_costs |
| Get parameters from DAEDALUS classes | get_data get_data.daedalus_country get_data.daedalus_infection get_data.daedalus_output get_data.daedalus_vaccination |
| Values of statistical lives lost | country_gni life_value |
| DAEDALUS model constants | AGE_GROUPS DIM_AGE_GROUPS DIM_ECON_SECTORS DIM_EPI_COMPARTMENTS DIM_VACCINE_STRATA i_AGE_GROUPS i_ECON_SECTORS i_EDUCATION_SECTOR i_NEW_VAX_STRATUM i_NOT_WORKING i_SCHOOL_AGE i_UNVACCINATED_STRATUM i_VACCINATED_STRATUM i_WORKING_AGE model_constants N_AGE_GROUPS N_ECON_SECTORS N_ECON_STRATA N_OUTPUT_COLS N_VACCINE_DATA_GROUPS N_VACCINE_STRATA VACCINE_GROUPS |
| Set parameters in DAEDALUS classes | set_data set_data.daedalus_country set_data.daedalus_infection set_data.daedalus_vaccination |
| Model output measures and groups for summaries and derived time-series | summary_constants SUMMARY_GROUPS SUMMARY_MEASURES |
| Vaccine investment scenario parameters | vaccination_parameter_names vaccination_scenario_data vaccination_scenario_names vaccine_scenarios |
