Package: daedalus 0.3.7
Pratik Gupte
daedalus: Model Health, Social, and Economic Costs of a Pandemic
Model the health, education, and economic costs of directly transmitted respiratory virus pandemics, under different scenarios of prior vaccine investment, policy interventions, and public behavioural change, using the 'DAEDALUS' integrated health-economics model adapted from Haw et al. (2022) <doi:10.1038/s43588-022-00233-0>.
Authors:
daedalus_0.3.7.tar.gz
daedalus_0.3.7.zip(r-4.7)daedalus_0.3.7.zip(r-4.6)daedalus_0.3.7.zip(r-4.5)
daedalus_0.3.7.tgz(r-4.6-x86_64)daedalus_0.3.7.tgz(r-4.6-arm64)daedalus_0.3.7.tgz(r-4.5-x86_64)daedalus_0.3.7.tgz(r-4.5-arm64)
daedalus_0.3.7.tar.gz(r-4.7-arm64)daedalus_0.3.7.tar.gz(r-4.6-arm64)daedalus_0.3.7.tar.gz(r-4.7-x86_64)daedalus_0.3.7.tar.gz(r-4.6-x86_64)
daedalus_0.3.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
daedalus/json (API)
NEWS
| # Install 'daedalus' in R: |
| install.packages('daedalus', repos = c('https://jameel-institute.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jameel-institute/daedalus/issues
Pkgdown/docs site:https://jameel-institute.github.io
decision-supportepidemiological-modelshealth-economicspandemic-preparednesspublic-healthrcppsdg-3cppopenmp
Last updated from:48a3ddd472. Checks:9 OK, 2 WARNING. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 295 | ||
| source / vignettes | OK | 309 | ||
| linux-release-x86_64 | OK | 276 | ||
| macos-release-arm64 | OK | 257 | ||
| macos-release-x86_64 | OK | 452 | ||
| macos-oldrel-arm64 | OK | 273 | ||
| macos-oldrel-x86_64 | OK | 735 | ||
| windows-devel | WARNING | 306 | ||
| windows-release | WARNING | 293 | ||
| windows-oldrel | OK | 278 | ||
| wasm-release | OK | 223 |
Exports:daedalusdaedalus_countrydaedalus_infectiondaedalus_multi_infectiondaedalus_new_behaviourdaedalus_npidaedalus_old_behaviourdaedalus_timed_npidaedalus_vaccinationget_costsget_dataget_epidemic_summaryget_fiscal_costsget_incidenceget_life_years_lostget_new_vaccinationsis_daedalus_behaviouris_daedalus_countryis_daedalus_infectionis_daedalus_npiis_daedalus_vaccinationset_data
Dependencies:abindbackportsBHcheckmateclicpp11daedalus.datadata.tabledust2montyRcppRcppEigenrlang
Evaluating the costs of pandemic scenarios
Rendered frompandemic_costs.Rmdusingknitr::rmarkdownon Jun 01 2026.Last update: 2024-09-20
Started: 2024-09-20
General model description
Rendered frominfo_model_description.Rmdusingknitr::rmarkdownon Jun 01 2026.Last update: 2025-11-12
Started: 2025-06-13
Getting started with DAEDALUS
Rendered fromdaedalus.Rmdusingknitr::rmarkdownon Jun 01 2026.Last update: 2026-04-30
Started: 2024-07-09
Modelling multiple contact settings
Rendered frommultiple_contact_settings.Rmdusingknitr::rmarkdownon Jun 01 2026.Last update: 2026-04-30
Started: 2026-03-30
Modelling outcomes under uncertainty in infection parameters
Rendered frominfection_parameter_uncertainty.Rmdusingknitr::rmarkdownon Jun 01 2026.Last update: 2026-02-05
Started: 2025-06-03
Modelling threshold-dependent economic closures
Rendered fromthresholded_response.Rmdusingknitr::rmarkdownon Jun 01 2026.Last update: 2026-02-05
Started: 2024-09-10
Modelling time-limited economic closures
Rendered fromtimed_response.Rmdusingknitr::rmarkdownon Jun 01 2026.Last update: 2026-04-30
Started: 2025-09-09
Value of educational time lost
Rendered frominfo_edu_value.Rmdusingknitr::rmarkdownon Jun 01 2026.Last update: 2024-11-25
Started: 2024-11-25
Value of life-years lost
Rendered frominfo_life_value.Rmdusingknitr::rmarkdownon Jun 01 2026.Last update: 2025-11-12
Started: 2024-11-25
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Represent behaviour-change mechanisms in DAEDALUS | class_behaviour daedalus_new_behaviour daedalus_old_behaviour is_daedalus_behaviour print.daedalus_behaviour |
| Represent countries and territories for DAEDALUS | class_country daedalus_country is_daedalus_country print.daedalus_country |
| Create and work with <daedalus_output> objects | as_daedalus_output class_daedalus_output is_daedalus_output print.daedalus_output validate_daedalus_output |
| Represent infection parameters for DAEDALUS | class_infection daedalus_infection is_daedalus_infection print.daedalus_infection |
| Represent non-pharmaceutical intervention strategies for DAEDALUS | class_npi daedalus_npi daedalus_timed_npi is_daedalus_npi print.daedalus_npi |
| Represent vaccine investment scenarios for DAEDALUS | class_vaccination daedalus_vaccination is_daedalus_vaccination print.daedalus_vaccination |
| DAEDALUS model for health, social and economic costs of a pandemic | daedalus |
| Get epidemic losses from a DAEDALUS model run | daedalus_costs get_costs get_costs.daedalus_output get_costs.data.frame |
| Run daedalus for multiple infection parameter sets | daedalus_multi_infection |
| Economic constants used in DAEDALUS | EARNINGS_LOSS_DISCOUNT econ_constants EDU_ANNUAL_ROR EDU_EFFECTIVENESS_REMOTE WORK_EXPECTED_YEARS |
| Epidemiological compartments and indices | COMPARTMENTS epi_constants idx_COMPARTMENTS i_EPI_COMPARTMENTS N_EPI_COMPARTMENTS N_INFECTION_SUBSYSTEM N_MODEL_COMPARTMENTS |
| Calculate daily incidences and summarise epidemic measures | epi_output_helpers get_epidemic_summary get_incidence get_new_vaccinations |
| Get parameters from DAEDALUS classes | get_data get_data.daedalus_country get_data.daedalus_infection get_data.daedalus_npi get_data.daedalus_output get_data.daedalus_vaccination |
| Get pandemic fiscal costs from a model run | get_fiscal_costs |
| Get life-years lost by demographic group. | get_life_years_lost |
| DAEDALUS model constants | AGE_GROUPS DIM_AGE_GROUPS DIM_ECON_SECTORS DIM_EPI_COMPARTMENTS DIM_VACCINE_STRATA FLAG_NAMES i_AGE_GROUPS i_ECON_SECTORS i_EDUCATION_SECTOR i_NEW_VAX_STRATUM i_NOT_WORKING i_SCHOOL_AGE i_UNVACCINATED_STRATUM i_VACCINATED_STRATUM i_WORKING_AGE MIN_DATA_COL_NAMES model_constants N_AGE_GROUPS N_ECON_SECTORS N_ECON_STRATA N_FLAGS N_OUTPUT_COLS N_VACCINE_DATA_GROUPS N_VACCINE_STRATA VACCINE_GROUPS |
| Set parameters in DAEDALUS classes | set_data set_data.daedalus_infection set_data.daedalus_vaccination |
| Model output measures and groups for summaries and derived time-series | summary_constants SUMMARY_GROUPS SUMMARY_MEASURES |
